About Me

A Biologist/Data Scientist is aiming to improve precision medicine and facilitate the process of drug discovery and development with Systems Biology and Data Science approaches.

Experiences

Data-driven Translational Research
  • Co-develop biomarkers to access likelihood of responses of cancer immunotherapy by analyzing the expression of genes associated with replication stress responsePatent link
  • Co-develop gene signature for identifying and treating cancers that are homologous recombination (HR)-repair defective and potentially sensitive to PARP inhibitor treatmentPatent link
  • Co-develop algorithm that generates robust multigene expression signatures for guiding the use of specific therapiesPublication link
  • Identify novel drugs and compounds for the combination therapy using gene signature-based approached with clinical patient dataGithub link

  • Biologics Discovery and Development
  • Initiate/led and develop a novel platform of therapeutic antibody discovery with B cell sorting, single cell sequencing and machine learning algorithms
  • Led preclinical development of therapeutic antibodies with antibody characterization, immune cell-based assay development, and in vivo efficacy and toxicology studies News link
  • Designed bi-specific antibodies and led preclinical development with characterization, immune cell-based assay development, and in vivo efficacy and toxicology studies News link

  • Data Science
  • Establish an intelligent system that integrates electronic medical records, chest X-rays, and deep learning insights to empower radiologists’ diagnoses and workflows.Webside link
  • Built a system on edge device to capture American Sign Language (ASL) and automatically convert ASL to audio.Video link
  • Education

      Postdoc in Systems Biology, UT MD Anderson Cancer Center

      Ph.D. in Genetics, Rice University

      Master of Information and Data Science, UC Berkeley

      M.S. in Biochemistry, National Taiwan University

      B.S. in Chemistry, National Cheng Kung University

    Skills

    Idea Initiation and Strategic Planning

    Initialize ideas, allocate resources, and access risks to ensure projects not only align company goals but also resolve challenges in a time- and cost-effective manner

    Team Collaboration and Project Management

    Effectively work and communicate with internal cross functional teams and external contract organization to achieve project goal within timeline.

    Biologics Development

    Experience in leading therapeutic monoclonal antibody discovery and development, biomarker discovery, cell-based assay development, clinical phase cell manufacturing quality control, GMP environment, high-throughput drug screening, and CRO/CMO management of immunotherapy and cell therapy.

    Data Science

    Experienced in analysis and data management of large volume complex datasets or images using Python and R programming, machine learning algorithms, convolutional neural network with Tensorflow, cloud computation, parallel computation with the MapReduce paradigm and Spark, and data visualization.

    Projects

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    RSRD Gene Signature

    Defective Replication Stress Response Is Inherently Linked to the Cancer Stem Cell Phenotype
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    ChestX.ai

    An intelligent system that integrates electronic medical records, chest X-rays, and deep learning insights to empower radiologists’ diagnoses and workflows
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    Iterative resampling analysis to predict sensitivity (IRAPS)

    Improved prediction of PARP inhibitor response and identification of synergizing agents through use of a novel gene expression signature generation algorithm
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    Genome-wide Transcriptome Profiling of Homologous Recombination DNA Repair

    A molecular profile of HR repair to assess its status at a functional network level, which can provide both biological insights and have clinical implications in cancer
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    Gene Signature-based Compound Identification

    Identify gene biomarkers to improve the prediction of treatment responses and compounds for combination therapy
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    Criteo Click Through Rate Prediction

    Apply Spark steaming and Spark ML Logistic Regression model to predict click through rate of advertisement
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    Forest Cover Prediction

    Machine learning-based forest resource management
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    Policy Recommendations for Reducing Crime

    Policy Recommendations based on multivariate linear regression
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    ASL to Audio

    Using CNN to convert the American sign languages directly to audio
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    IoT Face Recognition Application

    Build a lightweight IoT application pipeline with components running both on the edge and the cloud
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    Golden generation of NBA

    Discover greatest NBA generation through data visualization with Tableau
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    MIDS Course Loading Measurement

    Apply data visualization with d3.js to measure MIDS course loading by Fitbit sleeping score

    Contact Me

    Email: curtiscjlin@outlook.com